Table 1. Nested PCR protocol 1, 2, 3, 4

Protocol 1 Protocol 2 Protocol 3 Protocol 4
Outer Inner Outer Inner Outer Inner Outer Inner
Buffer qiagen (10X) 2.5 2.5 2.5 2.5 1.5 1.5
5X Q5 reaction buffer 5 5
Q5 hot start DNA polymerase 0.25 0.25
dNTPs [10 mM] 0.5 0.5 [25 mM] 1.25 [25 mM] 1.25 0.5 0.5 0.6 0.25
MgCl2 [25 mM] 0.8 0.8 0.25 0.25 0.3 0.25
Tag polymerase 0.2 0.2 0.2 0.2 0.15 0.15
HEV38/HEV39 [10 μM] 0.5 0.5 1 0.6
HEV37/HEV27 [10 μM] 0.5 0.5 1 0.9
Nuclease-free H₂O 15 15 14.8 14.8 12.5 12.5 9.25 9.05
cDNA 5 5 5 5 5 5 2 2
Total volume (µL) 25 25 25 25 20 20 15 15
Nested PCR, nested polymerase chain reaction; HEV, hepatitis E virus; cDNA, complementary DNA.